m3_get_mort_grid_pm25

Produce premature mortality attributable to PM2.5 exposure based on the integrated exposure-response functions (IER) from Burnett et al (2014), consistent with the GBD 2016 study.

m3_get_mort_grid_pm25(
  db_path = NULL,
  query_path = "./inst/extdata",
  db_name = NULL,
  prj_name,
  prj = NULL,
  scen_name,
  queries = "queries_rfasst.xml",
  final_db_year = 2100,
  mort_param = "GBD",
  ssp = "SSP2",
  saveOutput = T,
  map = F,
  anim = T,
  recompute = F,
  gcam_eur = F,
  normalize = F,
  downscale = F,
  saveRaster_grid = F,
  agg_grid = F,
  save_AggGrid = F
)

Source

Burnett, R.T., Pope III, C.A., Ezzati, M., Olives, C., Lim, S.S., Mehta, S., Shin, H.H., Singh, G., Hubbell, B., Brauer, M. and Anderson, H.R., 2014. An integrated risk function for estimating the global burden of disease attributable to ambient fine particulate matter exposure. Environmental health perspectives, 122(4), pp.397-403.

Arguments

db_path

Path to the GCAM database

query_path

Path to the query file

db_name

Name of the GCAM database

prj_name

Name of the rgcam project. This can be an existing project, or, if not, this will be the name

prj

rgcam loaded project

scen_name

Vector names of the GCAM scenarios to be processed

queries

Name of the GCAM query file. The file by default includes the queries required to run rfasst

final_db_year

Final year in the GCAM database (this allows to process databases with user-defined "stop periods")

mort_param

Method to compute the premature mortality estimates used in the plotting: GBD, GEMM, or FUSION

ssp

Set the ssp narrative associated to the GCAM scenario. c("SSP1","SSP2","SSP3","SSP4","SSP5"). By default is SSP2

saveOutput

Writes the emission files.By default=T

map

Produce the maps. By default=F

anim

If set to T, produces multi-year animations. By default=T

recompute

If set to T, recomputes the function output. Otherwise, if the output was already computed once, it uses that value and avoids repeating computations. By default=F

gcam_eur

If set to T, considers the GCAM-Europe regions. By default=F

normalize

Adjust the output to represent the number of deaths per 100K people. By default = F

downscale

If set to T, produces gridded PM2.5 outputs and plots By default=F

saveRaster_grid

If set to T, writes the raster file with weighted PM25 By default=F

agg_grid

Re-aggregate (downscaled) gridded data to any provided geometries (shape file). For the moment, only "NUTS3" and "CTRY" are available

save_AggGrid

If set to T, writes the raster file with the reaggregated PM25 By default=F

Value

Premature mortality attributable to PM2.5 exposure for each TM5-FASST regions for all years (# mortalities).