m3_get_mort_pm25 — m3_get_mort

Produce premature mortality attributable to PM2.5 exposure based on the integrated exposure-response functions (IER) from Burnett et al (2014), consistent with the GBD 2016 study.

m3_get_mort_pm25(
  db_path = NULL,
  query_path = "./inst/extdata",
  db_name = NULL,
  prj_name,
  prj = NULL,
  scen_name,
  queries = "queries_rfasst.xml",
  final_db_year = 2100,
  mort_param = "GBD",
  ssp = "SSP2",
  saveOutput = T,
  map = F,
  anim = T,
  recompute = F,
  gcam_eur = F,
  normalize = F,
  downscale = F,
  saveRaster_grid = F,
  agg_grid = F,
  save_AggGrid = F
)

Source

Burnett, R.T., Pope III, C.A., Ezzati, M., Olives, C., Lim, S.S., Mehta, S., Shin, H.H., Singh, G., Hubbell, B., Brauer, M. and Anderson, H.R., 2014. An integrated risk function for estimating the global burden of disease attributable to ambient fine particulate matter exposure. Environmental health perspectives, 122(4), pp.397-403.

Arguments

db_path: Path to the GCAM database
query_path: Path to the query file
db_name: Name of the GCAM database
prj_name: Name of the rgcam project. This can be an existing project, or, if not, this will be the name
prj: rgcam loaded project
scen_name: Vector names of the GCAM scenarios to be processed
queries: Name of the GCAM query file. The file by default includes the queries required to run rfasst
final_db_year: Final year in the GCAM database (this allows to process databases with user-defined "stop periods")
mort_param: Method to compute the premature mortality estimates used in the plotting: GBD, GEMM, or FUSION
ssp: Set the ssp narrative associated to the GCAM scenario. c("SSP1","SSP2","SSP3","SSP4","SSP5"). By default is SSP2
saveOutput: Writes the emission files.By default=T
map: Produce the maps. By default=F
anim: If set to T, produces multi-year animations. By default=T
recompute: If set to T, recomputes the function output. Otherwise, if the output was already computed once, it uses that value and avoids repeating computations. By default=F
gcam_eur: If set to T, considers the GCAM-Europe regions. By default=F
normalize: Adjust the output to represent the number of deaths per 100K people. By default = F
downscale: If set to T, produces gridded PM2.5 outputs and plots By default=F
saveRaster_grid: If set to T, writes the raster file with weighted PM25 By default=F
agg_grid: Re-aggregate (downscaled) gridded data to any provided geometries (shape file). For the moment, only "NUTS3" and "CTRY" are available
save_AggGrid: If set to T, writes the raster file with the reaggregated PM25 By default=F

Value

Premature mortality attributable to PM2.5 exposure for each TM5-FASST regions for all years (# mortalities).